rs51546047 SNP Detail

Summary

• ID
  rs51546047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:95756994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTAATC CCACCAAAAA
  GTTCCACTCC CTGGTGACTA AGCATTCAAC GATATGAACC TAAACCATCC CAGAAGCCCT
  TGGAGGACTA GTGCTCTGTT GTTGGGCAGT GGTGTTTTGA AAAGAACCTT CTGAGAAAAT
  CTCCACAGTG GCCTTAAAGT ATAACCAGGT TATAACAGAT ACCAGACAAT TGCACAGGCC
  R
  AGTAGAGTTG AGTCTTGAAG GTCCCGTAAC GCTCAGAATG GTCAGTGTAG CTCAGGTTCA
  ACTGGAAGTC ACTGCATTAA CTTCCTCTTT GCTATGCCCT CTGGCAGCCC AGGGTTCCCC
  TTTCTTCCGG AAATATGAGC TTGGGGCTGC TCAGGTCCAG TCCAACTGCA ACAACCTCTT
  CCCCCTCTAC CCTCACTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60249370	NES15760596	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51546047					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60249370	NES15760596	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:95756994 () rs orientation: forward

Symbol	Name	Function Class
D16Jhu52	DNA segment, Chr 16, Johns Hopkins University 52	125 bp proximal
Rr392178	regulatory region 392178	1027 bp downstream
Rr520450	regulatory region 520450	1215 bp distal
Rr520451	regulatory region 520451	17 bp proximal
Rr520452	regulatory region 520452	930 bp proximal
Rr520453	regulatory region 520453	1018 bp proximal