rs51546985 SNP Detail

Summary

• ID
  rs51546985
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:25208038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAAAGAT CAAAGGTTTT
  AAAAAAAATA GTTGGCTTAC TAACACAAGT ATGGATATTC CTGAATTTTA TAAACTTTAT
  AGTTACTTTT GATTGGCAAC ACATAAAACA GAGCATTGCA CAGACTAGAT GGATGAATTC
  CATCCTGAAT TGTTTTCAGT TAATTGCTTT CATATTTGTA TAATTTTTTC TTTTTAAGAA
  R
  CAAGTATGAG TAGGAAGGGA ACTAATTTTT AATTAATCGT CCTTTAAGAG GCTGATAAAA
  CTTGCTTCTT TTTATAAAAG TCAACAAAAA CTCTATATCA TTTTAATTTT GTGGTGTTTT
  GTTTTGTTTT GTTTTGTTTT GTTTTATTGT TTTGCTTCCC CAAACAGGGT TCTTCTGTAT
  AGCCTGGGCA TCCTAGAAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
ss61362703	NES16739096	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NZW/LacJ	PWD/PhJ
rs51546985					SNP	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61362703	NES16739096	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:25208038 () rs orientation: forward

Symbol	Name	Function Class
Septin7	septin 7	within coordinates
Tssr84136	transcription start site region 84136	1060 bp upstream
Tssr84137	transcription start site region 84137	1085 bp upstream
Tssr84138	transcription start site region 84138	1133 bp upstream