rs51547001 SNP Detail

Summary

• ID
  rs51547001
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153423784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCCATCTT CTTGTGCTTC GGGCTGCATT TATTTCATAT
  TTGATAAGAA CATCTTTAAG TTCTGATCGG GAAGCCTTAT ACATCTTTGA AAGCTATTAA
  M
  TGAATCACCA CTTAGATGCA GTTTGAGCTA AAAACATAGG GCCTGTGAGA GAAAAGGAGG
  GGGGCTGGCA GTCACTGTAA CACCCCCAGA ACACCCACAT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60820876	NES16434202	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs51547001					SNP	C	A	A	A	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60820876	NES16434202	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153423784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi868	CpG island 868	1447 bp proximal
F630010C12Rik	RIKEN cDNA F630010C12 gene	384 bp downstream
Npl	N-acetylneuraminate pyruvate lyase	within coordinates
Rr372265	regulatory region 372265	1250 bp downstream
Rr420696	regulatory region 420696	62 bp distal
Rr420697	regulatory region 420697	1404 bp proximal
Rr420698	regulatory region 420698	1997 bp proximal
Tssr14276	transcription start site region 14276	1659 bp downstream
Tssr14277	transcription start site region 14277	1696 bp downstream
Tssr14278	transcription start site region 14278	1780 bp downstream
Tssr14279	transcription start site region 14279	1800 bp downstream