rs51547080 SNP Detail

Summary

• ID
  rs51547080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:14066267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGAGACA TGCTTGTCGG
  TTAAGAACAC CTGTCTTGCT TGCAGAGGAC CCAGTTCAGT TCCTAGTAGT GTTTAATCTT
  GTCTGTGGGG ATGGATTGCT GCCTGCCTCT TAGGACATGC CTTCTTCCAT TTGGAAGTGC
  TCAGTTTCTA GCGCAGGGTG GTGTCTCCCA GCAGTGTCTT TTCACTGTTA CCTGAGCTGG
  R
  TGGTTTAGAT CCTTGTCTTT AACATGGCAC TCTCATTAAT AATCCAGACT TGTGTTATAG
  CTGCATGATA GCTACTTGAA GGAGTCAGCC TTCTGTCTGT TCTGAATGTT TGACTCGGTA
  ACTGATGAGG CTGAGAGGCT GTACTGCTAT GTCACACTGC AAAACTCCAT GTGGATACAA
  ACTAGCTTAG AGGTGCACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543077	NES16555056	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51547080					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543077	NES16555056	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14066267 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Afdn	afadin, adherens junction formation factor			Intron
				Noncoding-Transcript-Variant
Tssr142714	transcription start site region 142714			83 bp upstream
Tssr142715	transcription start site region 142715			90 bp upstream
Tssr142716	transcription start site region 142716			148 bp upstream
Tssr142717	transcription start site region 142717			167 bp upstream
Tssr142718	transcription start site region 142718			186 bp upstream
Tssr142719	transcription start site region 142719			752 bp upstream