rs51547866 SNP Detail

Summary

• ID
  rs51547866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGATACCAA GTCTGGCAAG
  ATAAAAGAAG TATTTTTTTA AAGTAGTTTA ATCCGGGGGG GGCGGGGGGA GTGACACACA
  GCCCTCAGGA GGCAGAGGCA GGCAGTTTTC TATGAGTTCG AGGCCAGTCT GGTCTACATA
  CCAAGTTCCA GGACAGGCAG AGCACCACAC ATTATTTAAA AAAAAAAAAA AAAAAAAAGC
  R
  TAAATCCGTT TCCCAGAGCC TCAGCATTCT CTTTGGACAG AATGTGTCTA CATTCAAGCT
  TACTGTTCTG TCTTCTGAGA CAGAGTTACT ATGTAACCTT TGCAGGCCTC AAACTCTAGA
  TCCTGCTGCC TCAATTTCCC AAGTGCCAGG TTGTGCTCAG TTTTTTTTTG TTGTTTTTTT
  TTTGTTGTTT TTGTTTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147738283	ENSMUSSNP3680845	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51547866					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	307 bp distal
Cpgi2388	CpG island 2388	718 bp proximal
Rr224447	regulatory region 224447	29 bp distal
Rr224448	regulatory region 224448	370 bp proximal
Rr402345	regulatory region 402345	350 bp downstream
Rr402346	regulatory region 402346	443 bp upstream
Spryd4	SPRY domain containing 4	567 bp upstream
Tssr99849	transcription start site region 99849	586 bp upstream
Tssr99850	transcription start site region 99850	538 bp upstream