rs51548121 SNP Detail

Summary

• ID
  rs51548121
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7507219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTATGGCGC TTGTCTAGGA
  TCGTCTTGCT GACCTACTTT GTTTACTATA ATTTAAACAT CTAGAGTTCA ATGTTTTAAA
  TAGATATAAT CACAAAACTG GATAAAGAGT AGTCTTTTGC TTAGAGGGTC TGTTGGCACT
  TGCAACCCAA ATTCTCTGGA GACCCTGCAT CGTCGGATGG CAGGTTATTA TTCCTGTCAG
  M
  TGACTTCATA AGGCAGCTTT ATCAGCTCCA AGGAAACCAT TCAGTCAGCC ACGTGCAGCA
  GGGGCCAGCA GCTGCCAGCG AGAGGAGAGG GAAGTGGGCC ATCTAAAGTC AAGTGGACAG
  CATGTAAACT CTACCTCATG AAGCCAGCGA GCACAGAAAT ACACCAAAGC ACCAGAAAGC
  CTCCCGGAGG GTAACTTGCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52134637	NES15245547	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51548121					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52134637	NES15245547	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7507219 () rs orientation: forward

Symbol	Name	Function Class
Pcmt1	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	within coordinates
Rr220299	regulatory region 220299	1619 bp distal
Rr220302	regulatory region 220302	1219 bp distal
Rr228712	regulatory region 228712	within coordinates