rs51548232 SNP Detail

Summary

• ID
  rs51548232
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:5084245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATTCAT AATTCCTGCA
  CCACAGGGTC TCTGCGCATT GGAGTGGTCC TGGTAAAGTG CCTTACAGTG TCTGGCCTGG
  AGTTAAGCAT GTGATTATTA GTAGCTCTAG TTACTAGAGA TTTTGTCTCG CTTAGTATTT
  GATACCAGGT TTTTGAGTCC CCCTTGGGGA CTCACTATAT TGTTTGTACT GTTTAATAAG
  M
  AATTCTAAAT TAACTGTGGA AAATGGCCCC ATTTTCAGCA GCATTTGTGA GATTTAGTAT
  GTTTTTTTTG AACATGCTTG AAGTAGGTAG TTGGTGTTAG GATAGTGCGT CTTTAGATGC
  CACCCTTTTG GAAATGTTTT TTCTGATAAT AATAGCAGCC AGGAGTACCG AGCGCCTACT
  ATCTGTGGGG CACAGAACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60963565	NES16157992	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51548232					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60963565	NES16157992	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:5084245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18280	CpG island 18280	232 bp distal
Epn1	epsin 1	within coordinates
Rr167875	regulatory region 167875	within coordinates
Tssr64418	transcription start site region 64418	1872 bp downstream
Tssr64419	transcription start site region 64419	1749 bp downstream
Tssr64420	transcription start site region 64420	948 bp downstream
Tssr64421	transcription start site region 64421	862 bp downstream
Tssr64422	transcription start site region 64422	676 bp upstream
U2af2	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	1308 bp downstream