GGTCTCTGAT GCTGCCTCTG AAAAACTTTT TAAAGGAATA ACATGCTTTG CATCTGCAAA AAGTAAGTGG ATGGAGGAAA GGCTGTGTGC TACTCGGATG R GATCTCAGAG GTATGAAATC AAGAAGTCTC ACAGAATGAG ACAGTTTAGG AAGATGCCAA GTTCTCTCAA GAGCATGTGC CCAAAGTCCG GGATGTGTGG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss52560002 | NES15632512 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A |
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
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rs51548412 | SNP | A | A | A | A | A | A | G | A | A | A | A | A | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss52560002 | NES15632512 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr15:60058576 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm2682 | predicted gene 2682 | within coordinates | ||||||
Gm41331 | predicted gene, 41331 | within coordinates | ||||||
Rr390810 | regulatory region 390810 | 90 bp upstream | ||||||
Rr502965 | regulatory region 502965 | 641 bp proximal | ||||||
Tssr4605 | transcription start site region 4605 | 477 bp downstream | ||||||
Tssr134460 | transcription start site region 134460 | 159 bp downstream | ||||||
Tssr134461 | transcription start site region 134461 | 300 bp downstream | ||||||
Tssr134462 | transcription start site region 134462 | 387 bp downstream | ||||||
Tssr134463 | transcription start site region 134463 | 447 bp downstream | ||||||
Tssr134464 | transcription start site region 134464 | 541 bp downstream | ||||||
Tssr134465 | transcription start site region 134465 | 595 bp downstream | ||||||
Tssr134466 | transcription start site region 134466 | 608 bp downstream | ||||||
Tssr134467 | transcription start site region 134467 | 644 bp downstream | ||||||
Tssr134468 | transcription start site region 134468 | 671 bp downstream | ||||||
Tssr134469 | transcription start site region 134469 | 702 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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