rs51548447 SNP Detail

Summary

• ID
  rs51548447
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154031669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGAGGGC TGGTTACATG
  GGTATGTCCC TTTGTCAATG CCTTGCAAGC CACACTTTAC CTTCGGTTCT TCTCTGTGGC
  ACTTCACTAG CCTGCAGGAT GACGATAAAT GTCAGCCATG ATGTCATGTA GCAGCCATGA
  GCATCACACA GACGACTCAG TCCCCAGGAC TGTTTTATTG GTTCCAGAAA GTTCTCTTGT
  M
  TGAGACTTTG GTACCAGCTA TGTCAGGCAT TGTGGCAACC TCATCCAGGG TCTATTGGCA
  CCACACTTCA TGCCTGCCGG CTTCCTTTTG TATCTAGGTA GCTTTGAAAA GGCAACTCAT
  CTTTCAGGCT AATACCTACC CCCATCTGGA CTTTGAGTTT AAACCCTCCA GGTCACCAGT
  TGCTTTGAAG TCCAAAGGGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148023864	ENSMUSSNP2105030	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320569682	CHEV_2_154015485	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51548447					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154031669 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	1069 bp upstream
Rr567773	regulatory region 567773	1952 bp distal
Rr567774	regulatory region 567774	579 bp proximal
Rr567775	regulatory region 567775	1080 bp proximal
Rr567776	regulatory region 567776	1306 bp proximal
Tssr20971	transcription start site region 20971	1000 bp upstream
Tssr20972	transcription start site region 20972	1014 bp upstream
Tssr20973	transcription start site region 20973	1027 bp upstream
Tssr20974	transcription start site region 20974	1057 bp upstream
Tssr20975	transcription start site region 20975	1084 bp upstream
Tssr20976	transcription start site region 20976	1519 bp upstream