rs51548886 SNP Detail

Summary

• ID
  rs51548886
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146753007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATCCTCT CTGTTTAATA
  ATAACCAGAT ACAAGAGAAT GAAAACAGGA TGCAAGGCTA CTGAAAAATA AAGACAGGGA
  CCTGTGTGTT GGATACGTTA TGTAGTGTCA GCTTTTAGTA CCAAATGCAA CAGATTTTAT
  GAATCATTTA ATTGAGGTAT TTTCTACCAG TTGTTTATTA TAAGAATCGG TAGTGATATT
  R
  TATGATTAAA AAGAACACCA ACAGTAATTA GGGTCCCTTT GCCCAATTAC CAAAGAGCCT
  GACACATAAT TTATGCTCAA TAAATACTTG TAGAATGAAG TCGTGAAAGA ATACATTCTC
  CTGTGACTAT TATTTTCATG GAGGTAGACT TAGGCAGCTA TTTTTAAAAA ATGTAAAATT
  TGGGTTTTCT GTAGAATTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096709	NES16601915	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51548886					SNP	A	A	A	A	A	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096709	NES16601915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146753007 () rs orientation: forward

Symbol	Name	Function Class
Rr587115	regulatory region 587115	279 bp distal