rs51550085 SNP Detail

Summary

• ID
  rs51550085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29580383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGCACC TGGGGTCCCT
  CCATCCTGGG TGCCTGGCAG TACAGGCAAC CACTGCTCTT GTGGTAGTAA GCTGGACAGG
  GTGAGCATGG GAGATCTCCA ATCCATGCAC ACACACATCC CACTCACACC AGGACACAAA
  TGGGAACAGG AAGGCGGGAC ACAGATGGAA TGTGGCTGAC TGGGACAAAG CAGAGCCATG
  Y
  TCACCAGGCC TCTCTCCTAA GTTCCTTTCT ATACCTCAGG GCTTACTCTG ATGGCCCTAG
  GGTGTGACTT GTTTGGTTCC CATCATAGGG AGAACAGAAG AGGGGACACA GGAACTAGCT
  TCTTTGAATT TTGGGGCTGT GCTGGCACTT GTGTCTGAAG GGAAAAGACA AAGCCAGGAG
  TGGGAGGGGT CCTGAGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60557921	NES16578190	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51550085					SNP	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60557921	NES16578190	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29580383 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	within coordinates
Rr405148	regulatory region 405148	378 bp downstream
Rr405149	regulatory region 405149	1671 bp upstream
Rr524885	regulatory region 524885	485 bp distal
Rr524886	regulatory region 524886	266 bp distal
Rr524887	regulatory region 524887	211 bp proximal
Rr524888	regulatory region 524888	1791 bp proximal
Tssr143531	transcription start site region 143531	489 bp downstream
Tssr143532	transcription start site region 143532	469 bp downstream
Tssr143533	transcription start site region 143533	441 bp downstream
Tssr143534	transcription start site region 143534	427 bp downstream