rs51550441 SNP Detail

Summary

• ID
  rs51550441
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:40962802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA AGGTGCATGG CCCATGTGCT
  A
  GCAATTTACA TGTTTGGAAA GCAGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144660191	ENSMUSSNP513279	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss322631342	CHEV_8_41595115	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51550441					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:40962802 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cnot7	CCR4-NOT transcription complex, subunit 7			Intron
				Noncoding-Transcript-Variant
Cpgi20281	CpG island 20281			1075 bp proximal
Rr662586	regulatory region 662586			958 bp proximal
Rr662587	regulatory region 662587			1533 bp proximal
Tssr2553	transcription start site region 2553			1455 bp downstream
Tssr2554	transcription start site region 2554			1716 bp upstream
Tssr76955	transcription start site region 76955			1655 bp upstream
Tssr81046	transcription start site region 81046			715 bp downstream
Tssr81047	transcription start site region 81047			1497 bp downstream
Tssr81048	transcription start site region 81048			1516 bp downstream
Tssr81049	transcription start site region 81049			1537 bp downstream
Tssr81050	transcription start site region 81050			1902 bp downstream