rs51550484 SNP Detail

Summary

• ID
  rs51550484
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:91178940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA AATCAAAGAT GAGCTCCAGA
  G
  GTGGTCAGTC AGTAAGCCTG GCAGG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144943428	ENSMUSSNP4587682	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss319839835	CHEV_1_93147795	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51550484					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91178940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr366958	regulatory region 366958			972 bp downstream
Rr415586	regulatory region 415586			1882 bp distal
Rr415587	regulatory region 415587			642 bp distal
Rr415588	regulatory region 415588			within coordinates
Rr415589	regulatory region 415589			645 bp proximal
Tssr8065	transcription start site region 8065			1002 bp downstream
Tssr8066	transcription start site region 8066			908 bp downstream
Tssr8067	transcription start site region 8067			838 bp downstream
Tssr8068	transcription start site region 8068			710 bp downstream
Tssr8069	transcription start site region 8069			632 bp downstream
Tssr12938	transcription start site region 12938			1143 bp upstream
Tssr12939	transcription start site region 12939			154 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)			Intron
				Noncoding-Transcript-Variant