rs51550719 SNP Detail

Summary

• ID
  rs51550719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:10993399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGTATG GGGAAATAAT
  CTGGATTTAC AGGGGAAAAA TGAGGGAGAA AGAAGTAGAG GTAGTCTCCT TTTATGGTTT
  GGAGAATTAA GGTTTTGCTG TTTCATCTCT AAAGGTATTC ACAAGAATTG ATTGAGAAAC
  CATCCAGGAA CTCCCACTGA AAGCCACCTG CTCTCACAAG CCAGATGTCA GTGTTGTAAA
  Y
  CTGGTTGAGT TGTAAATACT GCCTGATTAT GGCTGATTTG GTCTGATCAG AGATGCCTGC
  AGCAAGCACA ATGGCATCAG ATAAGGCCTG TGGGAATGTA TTTGAAGGTG ACTGTGCCTT
  GCAAGTTTAC ATTTCATAGC CAGGCACAAT TTACCACATC GCTGTCAAAC CAATTTGCAC
  ATTCAAATAA ATTAAATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61741548	NES17678338	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	T		T	T	T	C		C
ss324260910	CHEV_13_10942609	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51550719					SNP	T	C	T	C	T	C	C	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61741548	NES17678338	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:10993399 () rs orientation: forward

Symbol	Name	Function Class
Rr270346	regulatory region 270346	799 bp distal
Rr278201	regulatory region 278201	932 bp distal