rs51550768 SNP Detail

Summary

• ID
  rs51550768
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:77126825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGATACTTGC AATCTGAGAG AAAAAAAAAA AACTCGTAGC
  GTCCAGTCTG TTCTTTCTCT TCCAGATTTT CTTTTGTTTA AGTCCTGCTT TTCTGCAACC
  R
  GAGTCAATAT TGATTTAGGC AAATCAAATG TGGCTGGGAT GAGGAAGAAG GGGGAGTCAG
  GATATGTGTA AACATTGCAT TTAGTCCAAC TTCTGTGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148391600	ENSMUSSNP1808783	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325255107	CHEV_16_77330182	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51550768					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:77126825 () rs orientation: forward

Symbol	Name	Function Class
Gm60394	predicted gene, 60394	22 bp upstream
Mir99ahg	Mir99a and Mirlet7c-1 host gene (non-protein coding)	within coordinates
Rr518272	regulatory region 518272	587 bp distal
Rr518273	regulatory region 518273	333 bp distal
Rr518274	regulatory region 518274	within coordinates
Rr518275	regulatory region 518275	863 bp proximal
Tssr139047	transcription start site region 139047	692 bp downstream
Tssr139048	transcription start site region 139048	584 bp downstream
Tssr139049	transcription start site region 139049	560 bp downstream
Tssr139050	transcription start site region 139050	428 bp downstream
Tssr139051	transcription start site region 139051	412 bp downstream
Tssr139052	transcription start site region 139052	384 bp downstream
Tssr139053	transcription start site region 139053	318 bp downstream
Tssr139054	transcription start site region 139054	281 bp downstream
Tssr141826	transcription start site region 141826	386 bp upstream