rs51553090 SNP Detail

Summary

• ID
  rs51553090
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:24717848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA GATGGTGTAA TTATATAATA
  W
  CCTCAGAAAT AAATGGAAGA CAGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148095195	ENSMUSSNP4602150	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321495930	CHEV_5_24018668	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51553090					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24717848 () rs orientation: forward

Symbol	Name	Function Class
Gbx1	gastrulation brain homeobox 1	Intron
Rr608341	regulatory region 608341	1920 bp distal
Rr608343	regulatory region 608343	1832 bp distal
Rr608344	regulatory region 608344	233 bp distal