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rs51553603 SNP Detail
Summary
  • ID
    rs51553603
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:40123929 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AGAAG GTGAAAGTCT GGCCCAGCAG
    Y
    CTTCCCCAGT CAGGCAAGAA GCAGC                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60723901 NES16366414 PERLEGEN MM_PANEL2 f SNP C C C C C C C C T T C T T C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs51553603 SNP C C C C C C C C T T C T T C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60723901 NES16366414 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:40123929 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi194 CpG island 194 992 bp proximal
Gm16894 predicted gene, 16894 within coordinates
Il1r2 interleukin 1 receptor, type II within coordinates
Rr29353 regulatory region 29353 471 bp proximal
Rr396010 regulatory region 396010 967 bp upstream
Tssr62 transcription start site region 62 52 bp downstream
Tssr6411 transcription start site region 6411 20 bp downstream
Tssr6412 transcription start site region 6412 within coordinates
Tssr6413 transcription start site region 6413 6 bp upstream
Tssr6414 transcription start site region 6414 429 bp upstream
Tssr6415 transcription start site region 6415 1322 bp upstream
Tssr11414 transcription start site region 11414 1054 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory