rs51554370 SNP Detail

Summary

• ID
  rs51554370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62022758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGTGAG CACCAAGAGT
  TTCTGTCTAT GCTGAATGTT TAGGTCTGGC CTCTGGTGTG TTCATGGTCA TGGTGTTCTT
  TTTAAAGCCC CGCCTCCACC CTTCCTCATA TGGAACACAA GCTTCCCTGG TGAGGGGAAT
  TCCCTAACCC AGGCTTAGCT GGGTCTGAGA TTCTTGTTTT ATATCTATTG CCCTGTCTAA
  R
  ACTCTCACAG AAAAACCTAG AAACCCAGGT AGGGTTGGGG TGACACTTGG ACCGACTGCT
  CCTGCAAGGC CGGATGTCTC CAGCAGGGGG CGGCAAGCAC CAAGCTTTGT TTGGCATGGG
  TCCCTACAGA GCCCTACCTC GGTTACTTTC TATAACACGG GTAGACTTGT GATACCATTC
  TCCTACAGGA GCCCTGGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61279717	NES16893278	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	A	A	G		A	A	A
ss147125539	ENSMUSSNP6670154	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51554370					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279717	NES16893278	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62022758 () rs orientation: forward

Symbol	Name	Function Class
Rr215629	regulatory region 215629	within coordinates
Rr219987	regulatory region 219987	643 bp proximal
Rr228220	regulatory region 228220	within coordinates
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	507 bp downstream