rs51554791 SNP Detail

Summary

• ID
  rs51554791
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74862267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA GGGTGTCACT ACTACCCCAG
  W
  CTAGCCTACA GCTAGGATCC CCCCG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136638925	ENSMUSSNP1905958	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
ss323007484	CHEV_9_74802792	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51554791					SNP	T	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74862267 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	within coordinates
Cpgi22037	CpG island 22037	1402 bp distal
Rr401516	regulatory region 401516	1955 bp downstream
Rr683036	regulatory region 683036	1888 bp distal
Rr683037	regulatory region 683037	939 bp distal
Tssr86115	transcription start site region 86115	1894 bp downstream
Tssr86116	transcription start site region 86116	1776 bp downstream
Tssr86117	transcription start site region 86117	1410 bp downstream