rs51554958 SNP Detail

Summary

• ID
  rs51554958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122630513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAGAAA GACAAGAAAG
  CAAGAGAGGG GGGAGGGAAA ACCAAGAAGG ATGGCTGGGA AATTCCGGAT GTGCTCTTTT
  TATTGTTTGT TTTTCAAGAC AGGGTTTCTC TGCCCACCCC TGCCTCCCTG TGCTGAAATT
  AAAGGCATGC ATCATCACCA CCACCTGGCT AGATGGTTCA TTCTATAGGT GATGAAACAT
  R
  TAGAGGCCAC TGGGAAAGGC GGAGGGAGGC TGAGGGGAAA ATACGATTGG CTAGGGGAAT
  GGCTGATAAA TTCAGGAGGG ATTAGCCGGG TGTGGTGGCA CACGCCTTTA ATTCCAGCAC
  TCAGGAGGCA GAGGCAGGTG GTTCTCTGTG AGTTAGAGGC CAGCCTGGTC TACAGAGTGA
  ATCTAGGACA ACCAGGAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60938542	NES16184760	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51554958					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60938542	NES16184760	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122630513 () rs orientation: forward

Symbol	Name	Function Class
Rr638242	regulatory region 638242	681 bp proximal
Tssr58692	transcription start site region 58692	1027 bp upstream
Tssr62939	transcription start site region 62939	818 bp downstream