rs51554969 SNP Detail

Summary

• ID
  rs51554969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:48953088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTAAAA ACATATTTAT
  TTATTTCTAA CAATGAAAGA AATCAAATCC TGAAGGGTAG CGGTTATAAG AAATATTTTC
  TTATCTATTT GGTCTGCTTT AAATTCCATT CTTCAAAAGA CTGGGACCTG TCTCCTCACT
  TCCTCTCATT TTGAAGTTTT GGCTGCTGAA AAGAACATAT AATAACATGA AATAATGTAT
  Y
  ATAAGTTACT TCCAAGGATC TTGGCCCAGC CTTATCAGTT CTGGGGAGGC TGTTGTTGTC
  CTGAACTTTT ACTGCTGCCC AAGCCAGACA GGAGACTTGA GGTCCGGGTG CCCAGGGTTA
  TGGGTGGGGG TGGGGGGTAC TCTCTGAACA CATTAAACCT TCTGAGGATA GTTAAGGTTT
  CTGAGAACCT CTGGAGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149216077	ENSMUSSNP952654	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51554969					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48953088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav2	neuron navigator 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr647052	regulatory region 647052			46 bp proximal
Tssr66792	transcription start site region 66792			481 bp upstream
Tssr66793	transcription start site region 66793			740 bp upstream
Tssr66794	transcription start site region 66794			911 bp upstream
Tssr66795	transcription start site region 66795			941 bp upstream