rs51555162 SNP Detail

Summary

• ID
  rs51555162
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:32251737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA AAATTAAAAA AAAAAAGATA
  T
  TGGGATAGGG CATGGTAGAA CATAC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147948423	ENSMUSSNP1283053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss325136472	CHEV_16_32433005	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51555162					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32251737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8190	CpG island 8190	1270 bp distal
Pcyt1a	phosphate cytidylyltransferase 1, choline, alpha isoform	Intron
Rr404779	regulatory region 404779	1863 bp downstream
Rr404780	regulatory region 404780	1471 bp upstream
Rr514696	regulatory region 514696	1660 bp distal
Rr514698	regulatory region 514698	1057 bp distal
Rr514699	regulatory region 514699	1118 bp proximal
Tssr137980	transcription start site region 137980	1941 bp downstream
Tssr137981	transcription start site region 137981	1929 bp downstream
Tssr137982	transcription start site region 137982	1885 bp downstream
Tssr137983	transcription start site region 137983	1865 bp downstream
Tssr137984	transcription start site region 137984	1817 bp downstream
Tssr137985	transcription start site region 137985	1639 bp downstream
Tssr137986	transcription start site region 137986	1611 bp downstream
Tssr140804	transcription start site region 140804	1802 bp upstream