rs51555877 SNP Detail

Summary

• ID
  rs51555877
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170469996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACTAGA CATGACCATC
  ACTTGCTTCT TTAGGCTATG CTGCGTTTGT CCTATGCTGC TTTGGGGCAG GGGAGTCCCC
  ATGCTCCTTT GTAGCACTTC CCTGTTCATG TTCCCCTATT GCAAGGGCAT CTTATCTTCT
  CTTTGAAACA CCTAGCTGCC TAACCATCAC TTTTGGCTTA GACAGCCCTC AGCATTTTTT
  W
  AAAAAGATTT ATTTATTTAT TGTATGTGAG TACATTGTTG CTGTCTTCAG ACACAACAGC
  AGAGGGCATT GGATCTCATA CAGATGGTCG TGAGCCACCA TGTGGTTGCT GAGAATTGAG
  CTCAGGACCT CTGGAAGAGC AGTCAGTGCT CTTAATTGCT GAGGCATCTC TCCAGCCCCT
  CAACATTTTT GTAAACTACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146140229	ENSMUSSNP6459674	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss320111964	CHEV_1_172572558	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51555877					SNP	T	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170469996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi995	CpG island 995	1743 bp proximal
Tssr280	transcription start site region 280	1917 bp downstream
Tssr9927	transcription start site region 9927	413 bp upstream
Tssr14922	transcription start site region 14922	1901 bp downstream
Tssr14923	transcription start site region 14923	1952 bp downstream