rs51556530 SNP Detail

Summary

• ID
  rs51556530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGATGTGG CTGAGCCTGG
  CGGCGTTTGC CAGAGTACGG TTTTGTGGTG TGGTCTTAGA GAGTTAGTCC CACCTCTTCA
  ATCTAAGCAG TGGGGTGGCG GGACAGGGGT GGTTTCAATC AGCACCCGTG CCCTTGCCAG
  CCCAGGGTTG GTTACCCTTG GTGGAACAGG CCACCCAGAC AGGGCTGGAC CAATTGCTCT
  R
  CGGTCATAGG TCATCTCCAT CACCATTTCT CAGTGATGCC CACGCCCTCC TGTGCCTCCA
  CAACTTCCTG TTACATATTC CTCAGCAATT ACCACTCTGG AGTCATCTTG TTTATCTGTT
  AGCTCCCATT GTAAGTCATC CCCCAGAAAG CCAGCCCTGG CCTGTCTCCA TCATGGCACT
  CAGCACCTCT GGATAGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343966	ENSMUSSNP1408652	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320627903	CHEV_2_174298960	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51556530					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	518 bp upstream
Rr397557	regulatory region 397557	281 bp downstream
Rr572133	regulatory region 572133	572 bp distal
Rr572134	regulatory region 572134	836 bp distal
Rr572135	regulatory region 572135	469 bp distal
Rr572136	regulatory region 572136	441 bp distal
Rr572137	regulatory region 572137	264 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	523 bp upstream
Tssr28036	transcription start site region 28036	440 bp upstream