rs51557296 SNP Detail

Summary

• ID
  rs51557296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115627737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCT AGTTTACTTT TGTTAAGATA
  R
  TTTCATTTTT CAGCTTTTCC TACCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ
ss60828970	NES16028189	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ
rs51557296					SNP	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60828970	NES16028189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115627737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	143 bp proximal
Gm24265	predicted gene, 24265	79 bp downstream
Gm24407	predicted gene, 24407	576 bp upstream
Gm57305	predicted gene, 57305	within coordinates
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	1337 bp distal
Rr124163	regulatory region 124163	within coordinates
Tssr48292	transcription start site region 48292	356 bp downstream
Tssr48293	transcription start site region 48293	220 bp downstream
Tssr48294	transcription start site region 48294	144 bp downstream
Tssr48295	transcription start site region 48295	553 bp upstream
Tssr48296	transcription start site region 48296	648 bp upstream
Tssr52808	transcription start site region 52808	746 bp upstream
Tssr52809	transcription start site region 52809	729 bp upstream
Tssr52810	transcription start site region 52810	95 bp upstream
Tssr52811	transcription start site region 52811	152 bp downstream
Tssr52812	transcription start site region 52812	265 bp downstream
Tssr52813	transcription start site region 52813	277 bp downstream
Tssr52814	transcription start site region 52814	313 bp downstream
Tssr52815	transcription start site region 52815	507 bp downstream
Tssr52816	transcription start site region 52816	666 bp downstream