rs51557746 SNP Detail

Summary

• ID
  rs51557746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:91861023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACGTGGCG TGTGTCAGTC ACCATGGATA CCCACCCAGA
  GGTTTATGCG GCAGCCACTA TAGCCAGTCT CCGGCAGTGA TTGCTGCTAG CTCTTGGCTC
  M
  GCCAAGCGTC AGCCGGTATC CAGGCCTGGA CTCTGAGCCA CTGGCTGGAG AGGGAGGTCT
  GCAGCTCCCT GGTGGGAGTG ATGGGATTTA TTAATCAAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145564039	ENSMUSSNP6130690	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss322789578	CHEV_8_93658294	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51557746					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:91861023 () rs orientation: forward

Symbol	Name	Function Class
Aktip	AKT interacting protein	within coordinates
Cpgi20808	CpG island 20808	within coordinates
Gm63829	predicted gene, 63829	1111 bp downstream
Rr368579	regulatory region 368579	12 bp downstream
Rr667489	regulatory region 667489	409 bp distal
Rr667490	regulatory region 667490	within coordinates
Rr667491	regulatory region 667491	877 bp proximal
Rr667492	regulatory region 667492	1287 bp proximal
Tssr82405	transcription start site region 82405	373 bp upstream
Tssr82406	transcription start site region 82406	357 bp upstream
Tssr82407	transcription start site region 82407	1264 bp downstream
Tssr82408	transcription start site region 82408	1292 bp downstream
Tssr82409	transcription start site region 82409	1307 bp downstream