rs51560138 SNP Detail

Summary

• ID
  rs51560138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:118571868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAATCCTC CACTTCCAGC
  CATCTCTCTG ACATTTTTTC CTGTCCTTCT CCATAAAAAG CCATTTATAG ACTTTTGTTC
  TGTAATATCC TAACTTTGGA GTCACAAGAG GGGCAGACAA CTGAGTTAAG AGGTTGCTCT
  TGGTTCTTTA TCCAGACGCC AGGCTCTGGA CCCTGTAGGT GGCGCAGGCA GTCTGTGGTT
  Y
  TTTGTTACCT GCTTGTCACC TGAGGCAGAG AAGGAGGCTC CCAGGGGCAT GAGAAATAGC
  CTCACTCTCT CCCAACAACT GTGCTTTGTC TTTCCTTCTT GGCTGTAAAT ATGAACATTA
  TCAGTTTTTG ATGTGTGTGT GCAGTGCATG TGGGTGTCCT CAGAGGCCAG ACAAGGGTGT
  TGAGTCTCGT GGAGCTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60831002	NES16020056	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51560138					SNP	T	T	T	T	T	C	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60831002	NES16020056	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:118571868 () rs orientation: forward

Symbol	Name	Function Class
Gm71507	predicted gene, 71507	129 bp downstream
Rr366840	regulatory region 366840	within coordinates
Rr618904	regulatory region 618904	within coordinates
Rr618905	regulatory region 618905	12 bp distal
Rr618906	regulatory region 618906	1028 bp proximal
Tssr52899	transcription start site region 52899	1013 bp downstream