rs51560539 SNP Detail

Summary

• ID
  rs51560539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGCAGGT GGTATTTCAG
  CCAGAGACAA GCTTATTACA TGCCTTCTGG CTGGTCTTAG AAAAGCAACC TTAAAGCCAG
  TAAATTTGGA AAAACTCCAA GAGGTTTTCC AGGACAAGCA GGAGAGCCCA TCTCAGTTTT
  TAGAACGCCT CACAAAGGCC TTATTACAAT ACACTAAGTT GTTACTAAGG TAAACAATTT
  Y
  AGATGACCTA CTTTTTTCCC AGAGCTGCCC CAACATAAAA GCTAAACTTA GGCATTTGGC
  GAGGGGGCCT CTAACTCCAT AGGCGGAAGT CTTGGCGATG GCCTTCAAGG TGTACCATGA
  GAGAGATGAG AAAGCCCAAA AACAAAAACA CTGCAAGCTG GCAAAGGCTG TCCGACCAGC
  TCTAGCTACT ACCCCGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668095	ENSMUSSNP1836358	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss323016424	CHEV_9_78370766	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51560539					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430241 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22070	CpG island 22070	1837 bp distal
Gm47430	predicted gene, 47430	802 bp downstream
Rr206776	regulatory region 206776	840 bp distal
Rr383643	regulatory region 383643	1484 bp upstream