rs51562031 SNP Detail

Summary

• ID
  rs51562031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:118663927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTCACA GCTAAGTGGT
  CCAGTGATCA GAGAGCTGGG AGTGAAGACA GATGCCTGGA CAGTGGTAGT ACCCTCACAG
  TCAGGCCCAG AGGTGTCTTC TGGGTGATCA TAAACCTACT CAAGCTTAGA TGAAATCCAG
  TTAGAACTGC TGTCCCTGGT CACCACTTCT AACCAAGCCT GGGAGGTCTG AGGATCAGCT
  Y
  GTCACGGGGA TGTCTACAAC TGAGGACAGG CAGGCCTGAT GAGGTAACAC TCTAGTTCAA
  GATCATAGAA TTAACTGGCC AGTTCCTGCT TGACCATGTT TTCCAAATCA GACAGACATT
  CTCTGAGGTT TGTCAGGCTA GGTCATCTGA TTTGGGGGAT ACATGTTTCA CAGAGAAGGG
  AAAGCCACCT ACAGACTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61228697	NES16859580	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs51562031					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61228697	NES16859580	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:118663927 () rs orientation: forward

Symbol	Name	Function Class
Itga9	integrin alpha 9	within coordinates
Tssr87654	transcription start site region 87654	633 bp upstream
Tssr87655	transcription start site region 87655	662 bp upstream