rs51562033 SNP Detail

Summary

• ID
  rs51562033
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:19190087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAC CTGCCTGGGT AGAAGATAAA
  T
  GAGAAAAGGA AAAGGGGCCT CACGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148777398	ENSMUSSNP6811863	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322523288	CHEV_8_19140071	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51562033					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:19190087 () rs orientation: forward

Symbol	Name	Function Class
Gm45826	predicted gene 45826	707 bp upstream
Spag11b	sperm associated antigen 11B	688 bp upstream
Tssr76531	transcription start site region 76531	680 bp upstream
Tssr76532	transcription start site region 76532	1300 bp upstream
Tssr76533	transcription start site region 76533	1358 bp upstream
Tssr76534	transcription start site region 76534	1376 bp upstream
Tssr76535	transcription start site region 76535	1411 bp upstream
Tssr80550	transcription start site region 80550	1400 bp downstream