rs51563075 SNP Detail

Summary

• ID
  rs51563075
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:5308912 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        TCTCGAGACC TTAAACAGCA GTTGCTCTTA TTGAACGGTC
  GATGGAGGGA GCTCTTCATG GAAGTCAAGC AAGTATGTCC TTCAAACCAA CACTCACTTC
  K
  GATGCGTGTG CCATCAGTGT GCAGCAACTT GCTGACAGCC AGTTTTACTG CAATTATTAG
  GGTGGAATAG AGAACTGTTA AAAACTGCCT GAGTTTTATT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52118942	NES15249048	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51563075					SNP	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52118942	NES15249048	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:5308912 () rs orientation: reverse

Symbol	Name	Function Class
Gm23573	predicted gene, 23573	1633 bp downstream
Rr222920	regulatory region 222920	1680 bp proximal
Rr384081	regulatory region 384081	245 bp upstream
Syne1	spectrin repeat containing, nuclear envelope 1	within coordinates