rs51563254 SNP Detail

Summary

• ID
  rs51563254
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45015530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAGCTTT TCAGAACCAG
  GTGGGAGCGG GAGGCTCCAT GCCAAGGTTT CTAAGTGGCC TGGGCAGGGA CATTCACAAG
  CTCTATGTAA GTGAAGCAGC TAGAGTCCCA GAAAGCTAGA GTGCCTAAAG ATGGGCCTGA
  GAGCCCTGCG GCCCATCTGG GAGGGGGGCG CCGGGGAACC CCAGGTCAAA GGCGCGGTGA
  A
  GGGGAGGAAT CCCCACACCA CCTGCACCCC CCTCCTCCCT AGCGGCCGTG GAAGGAGATG
  GGGGAGGCGA GGCTACCGAG AGCTGACCAT GGACAGCTCC GGCGCGGGCC TGTGTCCAGG
  GCGAGCCGGC CTGGACCGAG GAACGTCTCC GGTTGATTCA ACCAGAAGGT GGGGGACGCA
  AATGGGGGAA CGATTTGGAC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss149134086	ENSMUSSNP1953158	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs51563254					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45015530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	within coordinates
Gm71276	predicted gene, 71276	1323 bp upstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	1785 bp downstream
Mtag2	metastasis associated gene 2	55 bp upstream
Ppfia3	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	within coordinates
Rr400310	regulatory region 400310	837 bp upstream
Rr646419	regulatory region 646419	89 bp distal
Rr646420	regulatory region 646420	within coordinates
Rr646421	regulatory region 646421	598 bp proximal
Rr646422	regulatory region 646422	1581 bp proximal
Tssr72376	transcription start site region 72376	662 bp downstream