rs51563438 SNP Detail

Summary

• ID
  rs51563438
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37136961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTA GCCCATTTAA GGGAAGATGC
  S
  CTGAGCGGCT GCCCACAGTC ACCTG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147623261	ENSMUSSNP7201786	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss324925293	CHEV_15_37066472	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51563438					SNP	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37136961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7042	CpG island 7042	644 bp distal
Gm34820	predicted gene, 34820	within coordinates
Gm41301	predicted gene, 41301	1135 bp upstream
Gm41302	predicted gene, 41302	within coordinates
Gm63629	predicted gene, 63629	within coordinates
Rr714	regulatory region 714	within coordinates
Rr501170	regulatory region 501170	1061 bp distal
Rr501171	regulatory region 501171	842 bp distal
Rr501172	regulatory region 501172	348 bp distal
Tssr131093	transcription start site region 131093	803 bp downstream
Tssr134082	transcription start site region 134082	948 bp upstream