rs51565108 SNP Detail

Summary

• ID
  rs51565108
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115929391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGAGTTTA CTATGTACAC
  CAGGTTAGCC TCAAAATCCT AGAGACCTCT GCCTCCTGAG TGCTGGGATT AAAGGAATGC
  ACCACTATAT TCTTTATATT TTTTAATATT AGTTTTTTAT ATTAGCTAAG GCATGAGGGG
  AGCCATGGTG GTGTGTTATG GGGTGACAGT CTTTGGAGGG GCCAGGGCAA GTCTCCCTGG
  Y
  AATGTGTTCT TTGTGGTGAG GTGCAAGAGT TGGCTATGCA AAGGAGCACA CAGAGCCCTC
  CAGTCTGAGG GAACAGGGCC CTTCATGGTC CAGAGAAGCC CGTGTAATTT TACATCAGTT
  TGATTGAGAA AATAAATAGT GGAAGACCAA ATCATGACTC AAGGACACTT AGCTGTCAGT
  ACACTGTCTG CACGTATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60827753	NES16023048	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51565108					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60827753	NES16023048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115929391 () rs orientation: forward

Symbol	Name	Function Class
Rr618351	regulatory region 618351	488 bp distal
Rr618352	regulatory region 618352	700 bp distal