rs51567097 SNP Detail

Summary

• ID
  rs51567097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70059393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATGCCCGTA CCCTTGCAGT GAATAGCCTT CACTGCCCCC
  CTCCTGTAAC CCCGTTCTTC TCCCTTCTGC CTCTTACAGT CTGGATCCTG AGTCATGACA
  Y
  CCCCTTCTCT TTCAGCAGCT CCTTCCCAGT CCTTCCTGTG GCGCATCCTC TCTTGGACCC
  ACCTCCTCCT GTTCTCCCTG GGCCTCAGCC TCCTGCTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss132366971	ENSMUSSNP2263636	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323733903	CHEV_11_69982069	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51567097					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70059393 () rs orientation: forward

Symbol	Name	Function Class
Clec10a	C-type lectin domain family 10, member A	within coordinates
Rr251315	regulatory region 251315	1531 bp distal
Tssr102659	transcription start site region 102659	1904 bp downstream
Tssr102660	transcription start site region 102660	1860 bp downstream
Tssr102661	transcription start site region 102661	1783 bp downstream
Tssr102662	transcription start site region 102662	1369 bp downstream
Tssr102663	transcription start site region 102663	1345 bp downstream