rs51569282 SNP Detail

Summary

• ID
  rs51569282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:43129836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAGACCT TGAATTTCAC
  ATCCCTTTGC TTCTCTTCCC AAGTGGAGGA ATTATAGCCT CTACACCTGG CTTTATGCAG
  ACTGGAGATA CACCTGATGT CTTCAGTCAT GCTAGGCTGG CAATCTGCCC ACTGAGCTAC
  ATTCCCATGG CCCCCTGTTG CTTTTTAAAG AGCAAGCTCC AGGCCTTTTA CAGTTCTACA
  R
  CTAGAAGAAG CTGCCAGTGG AGCACAGTAC CAACCTTTGT CTCTAGACAG TTTAGGCCAA
  AGCTGAATTG GCCGTGCAGG CTGCAAAAGC TCTGTCCCCA ACTTTAGGGC CAGAAGACTT
  CAACTCAGAT ATGACAGGAG GAAGGAGAGC AGAGAAAATA AGGCCAGGAG TTGTGCCGAG
  TCTTACCGAT GAGCTGAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss149008183	ENSMUSSNP6226931	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51569282					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:43129836 () rs orientation: forward

Symbol	Name	Function Class
8430432A02Rik	RIKEN cDNA 8430432A02 gene	1912 bp upstream
Cpgi213	CpG island 213	980 bp proximal
Rr410291	regulatory region 410291	1422 bp proximal
Rr410292	regulatory region 410292	1923 bp proximal
Tgfbrap1	transforming growth factor, beta receptor associated protein 1	within coordinates
Tssr11467	transcription start site region 11467	1762 bp downstream