rs51571735 SNP Detail

Summary

• ID
  rs51571735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:45225512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACCAAAAC ACTCCGGGAA TAAATCCTTC GAATGGTTAA
  CTGACTGTGG AGAGACGAAT GTGAACAATG TATTAACAGA TTCTTCAAGA TTGAGCCTCA
  R
  TAGAGAACAC TTAAGTGCCA TTTGTTTTCC ATCTGGGGCC ACAAACATGA CTCTAGAGGA
  TTACAAGAAC AGTTCCTGTT TTGTTTTGTT AGGATTGCTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss62358687	NES17228880	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs51571735					SNP	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62358687	NES17228880	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:45225512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6357	CpG island 6357	670 bp proximal
Gm17173	predicted gene 17173	within coordinates
Gm49364	predicted gene, 49364	within coordinates
Gm63525	predicted gene, 63525	1992 bp downstream
Ptger2	prostaglandin E receptor 2 (subtype EP2)	140 bp upstream
Rr491040	regulatory region 491040	within coordinates
Rr491041	regulatory region 491041	1789 bp proximal
Tssr4380	transcription start site region 4380	713 bp downstream
Tssr125199	transcription start site region 125199	109 bp upstream
Tssr125200	transcription start site region 125200	137 bp upstream
Tssr125201	transcription start site region 125201	401 bp upstream
Tssr125202	transcription start site region 125202	521 bp upstream
Tssr125203	transcription start site region 125203	598 bp upstream
Tssr125204	transcription start site region 125204	841 bp upstream
Tssr128221	transcription start site region 128221	1618 bp downstream
Tssr128222	transcription start site region 128222	1795 bp downstream
Tssr128223	transcription start site region 128223	1847 bp downstream