rs51571940 SNP Detail

Summary

• ID
  rs51571940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65072234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGAGGTA GGACCTTTGC
  AGGTGTTATT AAACTAAAGA TTTATAGAGG ATGCCACCTC AGAGTTCCTG AACAGGCCCC
  AAGTTTACTG CCAAATGTCC TGATGAGACA GATAAGAGGA CACAGAGACC AGGTGGTATG
  TGACTGTGAT GGCATCAAAC GGTGGACGCA GCCACTGTTG TGATCTTGGC TGCAAGTTAG
  K
  GGACGCCAAA CTGAAGCCAT AGAGCAAAAG AACAGTGCTG ACACTATTGG GATCAGAGCA
  GGATGGATCA AGTTTCTGGT GTGTTAAGCT AACTAGTTGG TGGCCCTTCG GGACAACGGA
  ATTTTAATCT TTCGTTCTGA TTGCCTCCTG GGGGCAGACT CTGTACACCC TGTAACCCTG
  CCAGAGAAGG AAGAGCTACG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62845451	NES17373249	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51571940					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62845451	NES17373249	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65072234 () rs orientation: forward

Symbol	Name	Function Class
Dreh	down-regulated in hepatocellular carcinoma	1872 bp upstream
Rr392835	regulatory region 392835	283 bp downstream
Rr529706	regulatory region 529706	within coordinates