rs51573121 SNP Detail

Summary

• ID
  rs51573121
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83716256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC ACAGCATCTG CGCCATTTCT
  S
  GCCCATGAAA CCGTTCCCCT GGACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136709521	ENSMUSSNP5784519	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51573121					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83716256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	145 bp proximal
Gm57060	predicted gene, 57060	within coordinates
Rr383689	regulatory region 383689	within coordinates
Rr683950	regulatory region 683950	within coordinates
Rr683951	regulatory region 683951	385 bp proximal
Rr683952	regulatory region 683952	526 bp proximal
Tssr86358	transcription start site region 86358	442 bp upstream
Tssr86359	transcription start site region 86359	481 bp upstream
Tssr90761	transcription start site region 90761	340 bp downstream
Ttk	Ttk protein kinase	486 bp upstream