rs51576009 SNP Detail

Summary

• ID
  rs51576009
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG AGGGCCTTAG GCGAAGCCCC
  S
  GAGACGAGAT GAAACGCTGT TTGTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145709002	ENSMUSSNP2800341	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
ss325406553	CHEV_17_47867227	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51576009					SNP	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041203 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	431 bp proximal
Tssr5147	transcription start site region 5147	1527 bp downstream
Tssr5148	transcription start site region 5148	965 bp upstream
Tssr5149	transcription start site region 5149	1205 bp upstream
Tssr145004	transcription start site region 145004	1536 bp downstream
Tssr145005	transcription start site region 145005	1515 bp downstream
Tssr145006	transcription start site region 145006	1486 bp downstream
Tssr145007	transcription start site region 145007	1454 bp downstream
Tssr145008	transcription start site region 145008	1433 bp downstream
Tssr145009	transcription start site region 145009	1405 bp downstream
Tssr145010	transcription start site region 145010	1023 bp downstream
Tssr145011	transcription start site region 145011	1004 bp downstream
Tssr145012	transcription start site region 145012	987 bp downstream
Tssr145013	transcription start site region 145013	935 bp downstream
Tssr145014	transcription start site region 145014	141 bp downstream
Tssr145015	transcription start site region 145015	126 bp downstream
Tssr145016	transcription start site region 145016	122 bp downstream
Tssr145017	transcription start site region 145017	320 bp upstream
Tssr145018	transcription start site region 145018	332 bp upstream
Tssr145019	transcription start site region 145019	363 bp upstream
Tssr145020	transcription start site region 145020	384 bp upstream
Tssr145021	transcription start site region 145021	410 bp upstream
Tssr145022	transcription start site region 145022	442 bp upstream
Tssr145023	transcription start site region 145023	469 bp upstream
Tssr145024	transcription start site region 145024	580 bp upstream
Tssr145025	transcription start site region 145025	924 bp upstream
Tssr145026	transcription start site region 145026	1180 bp upstream
Tssr148459	transcription start site region 148459	1477 bp upstream
Tssr148460	transcription start site region 148460	1425 bp upstream
Tssr148461	transcription start site region 148461	1413 bp upstream
Tssr148462	transcription start site region 148462	1370 bp upstream
Tssr148463	transcription start site region 148463	997 bp upstream
Tssr148464	transcription start site region 148464	912 bp upstream
Tssr148465	transcription start site region 148465	151 bp upstream
Tssr148466	transcription start site region 148466	117 bp upstream
Tssr148467	transcription start site region 148467	351 bp downstream
Tssr148468	transcription start site region 148468	382 bp downstream
Tssr148469	transcription start site region 148469	472 bp downstream