rs51576263 SNP Detail

Summary

• ID
  rs51576263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124674300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAAGCCAG GCACAGAGAG
  GAGGCAGATC TCTGTGATAT CTGCCTGAGG TTAGCCTGGT CTACACAGTA AGTTCCAGAA
  CCCTGTCTCA AAAAACAAGC AAACAAAAAC AAGGGTCCCA CGTGTGCTCT CAGCATCACA
  GTTACTCTCT GAATTATCAC AAGACTTGTA GGTTCATACA TTTTAATCAT AAGTCTCTGT
  Y
  AGACTCAGTA TTTCCTGTTT TCATGCAGAA AAAAATTCAC TTAAGATACA CACACACACA
  CACACACACA CACAAACATA CACACAAACA TACACACACA CACACACACA CACACACACA
  CACACATCAC TGTGTGTCTC TGGTTGCTTT GGAACTATAT AGCCAAGACT AGCTCTGATC
  CAGGGTCCTC CTACCTTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145836476	ENSMUSSNP820702	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51576263					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124674300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	1181 bp proximal
Gm45890	predicted gene 45890	1229 bp upstream
Nup133	nucleoporin 133	within coordinates
Rr672577	regulatory region 672577	1139 bp proximal
Rr672578	regulatory region 672578	1694 bp proximal
Rr672579	regulatory region 672579	1714 bp proximal
Rr672580	regulatory region 672580	1882 bp proximal
Tssr80007	transcription start site region 80007	1849 bp upstream
Tssr80008	transcription start site region 80008	1885 bp upstream
Tssr83414	transcription start site region 83414	1640 bp downstream