rs51578253 SNP Detail

Summary

• ID
  rs51578253
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATCGGATAC CAGTATGGGC ACAAAAAGAA GGCTAGTAAG
  TAGAGCATGA GTGCCTTGCA TGTCTGGAGG TGTTGGGCAG AGAAAACATG TAGTCTCAAG
  R
  CATGTATAAA TTTCAGAGAT ATTGCAATAT TTCCCATCTC CTAGAGTATT AGTATAGTCA
  TAGGAAGGAA TTTAACAGTC CCTTTCTTCC TCTTAAAGTT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss52288632	NES15304568	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs51578253					SNP	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52288632	NES15304568	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370340 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1503 bp downstream
Tssr93271	transcription start site region 93271	1385 bp downstream
Tssr93272	transcription start site region 93272	1330 bp downstream
Tssr93273	transcription start site region 93273	1059 bp downstream
Tssr93274	transcription start site region 93274	526 bp downstream
Tssr93275	transcription start site region 93275	393 bp downstream
Tssr93276	transcription start site region 93276	339 bp downstream
Tssr93277	transcription start site region 93277	291 bp downstream
Tssr93278	transcription start site region 93278	255 bp downstream
Tssr93279	transcription start site region 93279	99 bp downstream
Tssr93280	transcription start site region 93280	337 bp upstream
Tssr93281	transcription start site region 93281	377 bp upstream
Tssr93282	transcription start site region 93282	401 bp upstream
Tssr93283	transcription start site region 93283	478 bp upstream
Tssr93284	transcription start site region 93284	812 bp upstream
Tssr93285	transcription start site region 93285	1037 bp upstream
Tssr93286	transcription start site region 93286	1151 bp upstream
Tssr93287	transcription start site region 93287	1513 bp upstream
Tssr93288	transcription start site region 93288	1773 bp upstream
Tssr93289	transcription start site region 93289	1841 bp upstream
Tssr97556	transcription start site region 97556	225 bp downstream
Tssr97557	transcription start site region 97557	590 bp downstream
Tssr97558	transcription start site region 97558	1777 bp downstream