rs51578583 SNP Detail

Summary

• ID
  rs51578583
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107460759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATGATT ACGAACAGGG
  TGATGACGAT GATGGAGCCT GCTGAGATGG CAGGAGACAT TTCAGCAACA TAAACATGGG
  TACAGGAAAG CTCCACCAGT GGTGGGAGAT CACAGAAGAA ATGGTTGACT TTATTTGGTC
  CACAAAAAGT CAGGCTCAAT AAACAACTGG TACATGATGA AGAATTCACA CATCCACCCA
  K
  GTAGGAAATA ACCAATAAGA TGAGGCAGAC CTTGGGAGAC ATGAGAGTGG AGTAGAGCAG
  GGGTGAGCAG ATGGCCACAT AGCGATCATA GTCCATGGCA GCCAGCAGGA AGAACTCAGC
  AGTCCCAAAG ACCACATCAG AGCCAAGCTG GACTATGCAA CCAGCCACAG GGATGGCAGT
  TCTCTCTCTC AGCAAACTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss61045694	NES16080010	PERLEGEN	MM_PANEL2	f	SNP	G	T		T	G	T		T
ss322381993	CHEV_7_115005066	CHEVERUD	SCREENING_POP	f	SNP			T				G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs51578583					SNP	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61045694	NES16080010	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107460759 () rs orientation: forward

Symbol	Name	Function Class
Gm10156	predicted gene 10156	1487 bp upstream
Or5p5c-ps1	olfactory receptor family 5 subfamily P member 5C, pseudogene 1	within coordinates
Rr652939	regulatory region 652939	1339 bp proximal
Tssr68454	transcription start site region 68454	1408 bp upstream