rs51579766 SNP Detail

Summary

• ID
  rs51579766
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:107094139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGGAC ACACACATTG
  CTCACTGTAT GGAAATACTG ATCATTGGCT GAAGACTCAG AAACCGAACG TGAGTCATGT
  CCTGGGGCTG GAAAGCCCCT ACCCCAGTTC CTTCTCAGAG GTTCAGCCAA AACACTGGAA
  ACAGACTGGG GGCCCAGTCT CACAGTCACC CAGCAAAGTT TTCTGTTCTG ACCAAGCATG
  S
  TGGTAGGCCC TTGAAGAGGT GGCATGATTG TCAGGGCTTC TTAAGGCCTT GAAAGTCAGC
  CTGCTCCAGA GATGAGCCAC TAAGAGGTAG ATGCATCACT TAGAGAATAT TGGGAGAAAC
  AAGAACGGGG ACTACAGCCT CCAATTAGCT GCAAGGCTCA AGGCCACACA GCCACACAGC
  CACACAGCCA CCCAGATGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61696983	NES17649003	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51579766					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61696983	NES17649003	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:107094139 () rs orientation: forward

Symbol	Name	Function Class
Gm16084	predicted gene 16084	within coordinates
Gm16085	predicted gene 16085	1784 bp upstream
Rr369597	regulatory region 369597	1513 bp downstream
Tssr114937	transcription start site region 114937	1778 bp upstream