rs51580208 SNP Detail

Summary

• ID
  rs51580208
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20580893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACGGGG AATCTGATGT
  CCCTGGCCTG TGAGCACACA CATCTGTACA CAAACCTGTG CACATCGAAC ACACACTAAA
  GGGAAAAGAA AAGGCAGTGG AGAATGATAG AGAAAAACAT GTTGACCTCT GGCCTCATGC
  AGGGACACAC ACCTGCCTAT GCACATTCCT TTATGAACAT ATAACAAAAG GACCCTAAAT
  Y
  AGTGGTGATG ACCTGAAGGA TCAGGGAACA TTTTCCTCTA GGAGACTTAC TAGGATCATA
  GATTCACTGG ACACTAGGTT GAGACTGTTC ACTGAACAGC TATTGGGTAA TAAGAGGTTA
  CTTTGATTTC ACTATATTTT GGTTGGTTTG ACTTGGTTTT TGTTGTTTTG GTTTTGGTTT
  TGGTTTTTGA GTAGAGTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61358368	NES16736065	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51580208					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61358368	NES16736065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20580893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21396	CpG island 21396	990 bp distal
Olfm2	olfactomedin 2	within coordinates
Tssr88321	transcription start site region 88321	1678 bp upstream
Tssr88322	transcription start site region 88322	1601 bp upstream
Tssr88323	transcription start site region 88323	1583 bp upstream
Tssr88324	transcription start site region 88324	1501 bp upstream