rs51580827 SNP Detail

Summary

• ID
  rs51580827
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91177786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAACCGGTCG GATTCTTTGC GTTCAGGAAT GGTGCCGGGC
  ACAGGAACTT AGCTCCACCA GCAGGCACTG CACTAGTACG ATATTCCTAG GGAAGCAAGC
  Y
  GCTAAATGAA TGGAAACAAA CCGGAAGGCC GCTAGGCGGT CGGGGATGCT TGCGCTTCGG
  TGACCAATCA GCAAAGGTCT TGACACATGG CCCACCCTCA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144943423	ENSMUSSNP4266963	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51580827					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91177786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	within coordinates
Rr366958	regulatory region 366958	within coordinates
Rr415586	regulatory region 415586	728 bp distal
Rr415587	regulatory region 415587	within coordinates
Rr415588	regulatory region 415588	513 bp proximal
Rr415589	regulatory region 415589	1799 bp proximal
Tssr8065	transcription start site region 8065	129 bp upstream
Tssr8066	transcription start site region 8066	233 bp upstream
Tssr8067	transcription start site region 8067	247 bp upstream
Tssr8068	transcription start site region 8068	418 bp upstream
Tssr8069	transcription start site region 8069	511 bp upstream
Tssr12938	transcription start site region 12938	within coordinates
Tssr12939	transcription start site region 12939	1308 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates