rs51582473 SNP Detail

Summary

• ID
  rs51582473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62020653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGGTG TGTATGCATA
  CATGCACATG ATATACATTT GTGGGTGTAG TTCAGAGGAC AACTGGCAAA ACCTGGCTCT
  CTCTTCCCAT TTGTGTTGCC CTTAACTACA GAGCATTCTT GCCAGTCCAG GTATGTTTTT
  TGCATAGATA TGCAAATGTT CATTGCAATA ACAGAATAAA GTTGTCACTG AATACAGCAA
  Y
  GCATATCTTT GATCTCATGG ACATCTTTGA AGTTTGAGGC CAGTCAAGGC TACAAGTCTC
  TCTTGTCTGT CTGTCTGTCT GTCTCTCAAC AAAAAATGCT AAAAATGCCC ATTGATTGGT
  AAATGCATAA ACTAACTATG GTGTGTTCAT ACAATGGAAC AGAATACAAC TTGGCCACAG
  AAATGAATGG CTTTCAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61279730	NES16893322	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51582473					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279730	NES16893322	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62020653 () rs orientation: forward

Symbol	Name	Function Class
Rr215628	regulatory region 215628	1053 bp distal
Rr215629	regulatory region 215629	1748 bp proximal
Rr228219	regulatory region 228219	999 bp distal
Rr228220	regulatory region 228220	1470 bp proximal
Rr401940	regulatory region 401940	1432 bp downstream
Tspan15	tetraspanin 15	522 bp downstream