rs51584452 SNP Detail

Summary

• ID
  rs51584452
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62109818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCACGG GGTCGGAACT
  GTTGGGATCT GCGTCCCCAG CCCCCACCAT GCTTCTGCCT CTTGTCACAC GCAAAGCAAA
  TGTTTTTCTC AGTGTACTAT TTGTCGCCCC CCCCCCAATA CCAATCTTTA AAAGGCCTTA
  CAGAACCTAT GGAGCTCTGG TTTGTTCTGT CTTTGCCATT AAGCTGTTAG AAACTGGCAG
  S
  TTACGTGAGG ATGCTGGGGA TGGCAAATGG GAGTGGCCGT TTGGGAAAAC AATATGGTGG
  TTCCTCAGGA AACTGAAAAG GGAATTACCA CAGGTCCCAG CCAGTCCACT TGTGAGTATA
  TACATAAGAG ACACGACAGC AGGGACCAAA CAGATGTTTA CTCCCCAACC CCCCCCCCCA
  TGTTCAGAGA GTCATTTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61279449	NES16892089	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51584452					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279449	NES16892089	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62109818 () rs orientation: forward

Symbol	Name	Function Class
Hk1	hexokinase 1	within coordinates
Rr215635	regulatory region 215635	1418 bp distal
Rr215636	regulatory region 215636	583 bp proximal
Rr230329	regulatory region 230329	1144 bp proximal