rs51584627 SNP Detail

Summary

• ID
  rs51584627
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126932075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATGTTT TTTATTTTAT
  TTTATTTTAT TTTATTATTT TTGTGGGCTG GAAAGTTGAC TCAGTGGTTG AGAGTAATTG
  CTGTTCTCAC AAAGGATGAA AGTTTGATTC CCAGCCCCCA CTTGGAGGCT CACCACCTCC
  TTACACACCA GGCATGCATT TGGTGCACAG ATATGCATGC ACACAATAAT AAAAATAAAT
  Y
  TAAAATTTAA ACCTTTTGTT ATTGGTGGGG AGTGGGGGGG GGGCTACCAT AGTGCACAGG
  TGGGGGTCAG GGGACAACTT TGAAGGGTCT GTTCTCTCCT TCCACTGTGG CTCTTGGACC
  TAAATTCAAG CGGTCAGGCT TGTATGGCAA GTGTTCTGAC TCACTGAACC ATCTTACGGC
  TGCTGTTGTT GTTGTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145879509	ENSMUSSNP4660785	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51584627					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126932075 () rs orientation: forward

Symbol	Name	Function Class
Itgal	integrin alpha L	within coordinates
Tssr69200	transcription start site region 69200	541 bp downstream
Tssr69201	transcription start site region 69201	667 bp upstream
Tssr69202	transcription start site region 69202	699 bp upstream
Tssr69203	transcription start site region 69203	747 bp upstream
Tssr69204	transcription start site region 69204	878 bp upstream
Tssr69205	transcription start site region 69205	1810 bp upstream