rs51585573 SNP Detail

Summary

• ID
  rs51585573
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51632793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATATCA GAAACCATTT
  TGACAAGTGT GTATCCTCAG GGCCTATCTT ATTACTGTAA CTCAATAAAT CATGACCAAG
  TCTTAAACAA GTGCCCTGGC CTCAGTTAAC CAATCTATAC AATGATATTC TTGCATAAGT
  GATCTGCAAA GCTCTTCCAG ATTTTAAAAG TATGTATTTA TAGGATAAAA GAAATGATTG
  Y
  TCAATATATA AGCACAAAAA TTATGGTATA TCCATAGAAA TGGATTAATC ATCTCTCAGC
  AATAGATATA AAAAAAGAAT GAACCTTAGC TACACACAAC AATGCGGATG AATCTATAAA
  TATTTGTGCT GAGTGAAATA AACCAGACAA GAAAAAAAAA AAAAGGAGAA AAAAAGCTTT
  CATTTACATA AAACCCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss149111909	ENSMUSSNP1021655	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51585573					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51632793 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	364 bp upstream
Rr410724	regulatory region 410724	172 bp proximal
Tssr6634	transcription start site region 6634	359 bp upstream
Tssr6635	transcription start site region 6635	536 bp upstream
Tssr6636	transcription start site region 6636	614 bp upstream